PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00060.1.g00440.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 312aa    MW: 33227.3 Da    PI: 6.4183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00060.1.g00440.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-202776255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                   y+GVr++  +g+WvAeIr+p   +kr+r++lg+f taeeAa a+++a+++l+g
  Zpz_sc00060.1.g00440.1.sm.mk 27 EYRGVRQRT-WGKWVAEIREP---NKRTRIWLGSFATAEEAALAYDEAARRLYG 76
                                  69****999.**********9...337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-282686No hitNo description
PROSITE profilePS5103222.4842784IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-212785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-302785IPR001471AP2/ERF domain
SMARTSM003808.3E-372790IPR001471AP2/ERF domain
PfamPF008474.3E-142776IPR001471AP2/ERF domain
PRINTSPR003671.8E-102839IPR001471AP2/ERF domain
PRINTSPR003671.8E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RIWLGSFATA  60
EEAALAYDEA ARRLYGPDAF LNLPHLRASV SAAAAHQRLR WLPASARGGG AVAAVPAYGL  120
LNLNAQHNVH VIHQRLQELK NSSPPSKPPQ GARGPHELMA PLPASSYPCS TVTTGVSTCA  180
ALPPPPPPLM SCFQALEQTA ATTEMTAGAS PCDGEGACVD KPQLDLREFL QQIGVLKGDE  240
EGAVTKDGFH GEGDVAGAFG NGEFDWDALA ADLNDIAGGH SGAVGVNGAF QMDDLHEVDQ  300
FGSYLPIPVW DV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-172884663ATERF1
3gcc_A4e-172884663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278741e-154KJ727874.1 Zea mays clone pUT5967 AP2-EREBP transcription factor (EREB38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985522.11e-157PREDICTED: dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-128DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLK7W2Q81e-134K7W2Q8_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G376255_P011e-134(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.19e-44ERF family protein